I am 99% sure neither one of those issues can be vacuum line related in the KK. In an XJ, yes, but both the mode door actuators for the climate control and the cruise/throttle control are run by electric motors in the KK.
Check the How-To index in the KK tech section for info on the mode door/blend door issue. Pretty sure there is info there for you.
Do you have any check engine light or stored codes? The cruise sometimes goes out when the ABS goes out, due to a bad speed sensor on one of the hubs. This would turn on the ABS, Traction Control Off, and maybe some other warning lights on the dash.
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2008 Liberty Sport 4x4 Automatic
Jeepin By Al 4" Lift Kit
BFG KO2’s 245/75R16
Full MOPAR skid plates
Rock Lizard Skink Super Sliders
AtTheHelm Front Recovery System & Roof RackM116A3 Trailer build thread: viewtopic.php?f=72&t=77997