Depends on what you want to do. As I understand it, if you want to keep the EGR hooked up but reduce/eliminate its function then msilbernagel's suggestions are on point. If you want to physically remove the EGR (options range from pulling and plugging its pipes to total physical removal and rerouting of its coolant lines) without a CEL I'm pretty sure you need the SEGR. At least I've never gotten a totally clear, possibly related to EPA issues, answer as to whether or not you can remove the EGR without a CEL if you just have a tune.
What I can tell you is if you get a GDE tune and leave the EGR intact is that you won't have future EGR problems. In addition if you have a tune and leave the EGR in place you or any future buyers of your CRD will not have any EGR emission related inspection problems.
_________________ Sold to LOST member my 05 Ltd, GDE Stg II turbo + TCM tune, SunCoast TC w. Transgo kit, Steiger window regulators, Samcos, Fumoto valve, 2nd gen filter head with Lub. Spec. bleeder, Hayden clutch & 11 blade fan, inverted spare, P-1 battery, BF Goodrich Long Trail TAs, Etecno1 glow plugs, timing belt at 50K miles/8 yrs
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