The FCV is not an essential component, and letting it fail WILL NOT hurt anything in the engine. Point of fact, I don't believe that if the thing dies it will even cause a CEL, and because it is not part of the powertrain, it will not be covered under warranty.
The part alone is over $400. For the member who has the 06, your CRD only came from the factory with a 3/36, so unless you bought an extended warranty... Having only 11k on your CRD (wow, seriously new truck) doesn't mean you are under warranty. That vehicle timed-out of the factory covers-all warranty. Spending the deductible (if you bought an extended warranty) is not a good idea, b/c you will be risking the dealer screwing something ELSE up, replacing something that is used two times, for no useful purpose: To increase the factory EGR flow even more by choking off the life-giving oxygen your engine needs... And "softening" the engine shutdown by trying to again - choke the intake closed. At shutdown, your engine stops rotating LONG before that thing has a chance to close completely, so it is basically doing nothing at all.
I have been running without mine for many many months - It failed before my vehicle hit 60k, and my CRD is right on the doorstep of 100k.
No CEL, no buzzing from it (which is how I figured out it was dead) but for good measure, I pulled the two screws from the valve flap in the center (big disc) and put it back in. Looks stock, but completely impotent now.