Get your CRD away from that dealer!!!!!
I would bet money that your intercooler is NOT damaged in any way. I lost my turbo without any warning, and lost the engine shortly after that (10 miles after new turbo) so you want to talk damage... I'm the guy. But the IC was NOT hurt at all. That dealer is trying to make up their service department salary off your wallet.
YOU can remove the turbo yourself in the driveway, it isn't that bad of a job and will probably take about 2-3 hours the first time, just because you will be exploring and going slow.
I can dig down and get to my turbo in about 30 minutes now, 1 hour and it is out if I wanted it. You can buy just the turbo from your parts department (who will be VERY likely to charge full retail - find another dealer and as for "shop rate") I got mine from a friend who works at a dealer, but expect them to tell you the price is $1850. Dealer cost was around $850. Right now, Mopar Parts America has the turbo listed for $1264... So that turbo kit from GDE is starting to sound pretty good.
In reality, there isn't much that you would need to do other than turn some wrenches to replace this. It is a VERY simple unit - 2 exhaust ports, 2 air ports, 2 oil ports... 4 nuts that hold it to the engine (one of the exhaust ports) and 3 heat shield bolts. Seriously. I could probably talk you through the entire replacement right now, but it would take all the fun out of it.

You don't even need any special tools... Open ended wrenches in a 1/2", 10mm, and the same in sockets with an extension are just about all you need.
Just get your CRD away from the dealer. They will KILL you on their labor rate for this, b/c you are out of warranty. Tow it out yourself if you have to.