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Check pg 349 of your 2005 Owners Manual for relay locations and pg 7-13 of the 06 FSM for diagnosis, yes I know that's for the gas engine but the logic is the same and there is no equivalent diesel discussion. My past experiece, different vehicle though, with the fan always on symptom was a failed fan relay (the sensor on the tstat runs the temp gauge and might, I don't know, also link to the fan via a relay but since your temp gauge reads fine I'm betting it's a relay). The fan is 2 speed with the speeds controlled by 2 different relays (R34=hi and R40=lw). A member that knows more about electrical systems than I might have a better idea but if the 2 relays are identical, you may be able to tell by their labeling, then you might be able to check for a stuck relay by seeing which relay you need to pull to kill the fan and them plug the other relay into that slot. If the fan does not come on then the pulled relay is probably bad and you should be able to plug it into the other slot which will turn the fan back on if the relay is stuck.
Your other 2 symptoms would appear to be unrelated but then I'm no post-1975 car electrical system expert.
_________________ Sold to LOST member my 05 Ltd, GDE Stg II turbo + TCM tune, SunCoast TC w. Transgo kit, Steiger window regulators, Samcos, Fumoto valve, 2nd gen filter head with Lub. Spec. bleeder, Hayden clutch & 11 blade fan, inverted spare, P-1 battery, BF Goodrich Long Trail TAs, Etecno1 glow plugs, timing belt at 50K miles/8 yrs
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