Others may be able to offer better information but here is what I can offer:
1. the CRD AC condensor contains the transmission cooler, probably in the bottom, similar to the setup on other vehicles where the tranny cooler is in the bottom of the radiator.
2. if the tranny cooler portion of the AC condensor goes bad, not common but does happen, the expensive fix is a new AC condensor and the cheap fix is to simply bypass things to an auxillary tranny coolers (see
http://liberty.eurekaboy.com/transcooler.htm for a sample install although I think he did this as extra cooling not replacement cooling).
3. the tranny lines connect to the cooler with some sort of semi-quick disconnect fittings that do have a tendency to leak. However IIRC those fitting and or lines are not that hard to replace.
At this point things get hinky in my opinion.
1. slight leakage of the cooler connection lines at the fitting has ZERO or less to do with no shift unless enough fluid leaked out to prevent the shift. Was your fluid low? If not those leaks are not the cause of your problem. If fluid was low add fluid and see if problem goes away. If it does fix leaks.
2. I really love shops that want to spend your money running scans and diagnostics. Cynical me it's sort of like a tire shop running suspension and alignment and brake diagnostics before they notice and fix a flat tire. I've reached the point where my standard speech and what I write on the ticket, if I don't have a personal relation with the shop, is you will perform check "X" and you will call me with the results before doing any other work on my vehicle that you expect to get paid for.
3. sounds to me like they might??? have dropped the tranny pan and decided that since they saw no broken pieces in the bottom that the plate was ok rather than undoing like 6 bolts and actually looking at the plate which can easily be the problem without shedding parts. I'd ask them for a simple yes/no answer - have they dropped the tranny pan and removed the valve body and physically inspected the plate for looseness or cracks or.. If not instruct them to quit screwing around on your nickel and do so and until they have done so and reported the results to you no further work is authorized (note time and who you spoke with)
Obviously if after they actually inspect the plate and it's attaching bolts it's in fine shape then you have some other problem.
FYI see
http://liberty.eurekaboy.com/transgo.htm for a dated post on the Transgo kit that lacks the pump seat part. The resistor is not needed, does nothing as the tranny learns around it, and IIRC no longer even comes in the kit.