Ok, so I've been an owner for just under a year, and the engine light was on from the time I purchased. Initially it was a P0401, the EGR, and I finally replaced it 3 weeks ago, along with the glow plugs, for I was showing failure on 1 and 2. Since I had to get around the throttle body I figured I would do both at the same time.
Needless to say, I got the job done, with the only snafu being #2 plug snapping off and me having to use a straight tap to get it out. It was very satisfying when I reefed on it and it came free.
The neck past the throttle body was absolutely caked with what I can only describe as shoe polish, so I thoroughly cleaned it out, put it all together, made an appointment for a reflash for the 5v plugs and felt pretty good when she started.
The flash went off without a hitch and I was CEL free for the first time since I took ownership. The power was smooth, and I opened her up on the highway a few times, loving the torque.
So I figure it's time for a mod. The CCV hose intake above the turbo definitely bugged me, and I had purchased one of those BMW cyclonic separators. I figured a good place to affix it next to the power steering fluid rez, so I went in.
I pulled out the filter box, removed the boost hose, then went to remove the air hose, and it just came away without me loosening off the O clamp. doo doo. Well that stopped me. It was after hours and I wouldn't be able to call the stealer to order one til the next day. I looked at the hose. It had basically tore all round at the flare of the intake casting of the turbo. I got out a knife, cut all the loose debris away, carved enough room for the O clamp, and reattached it, making the best mate I could, tightened up the O clamp and put it back together.
This is when the black smoke started. I went for a cruise, and 5 minutes in, accelerating away from a light, I just smoked out a group of cars behind me.

My assumption was that I was sucking air around the seal, and the ECU was misreading the air to fuel mix. I eased off the throttle.
I ordered the part, which took a week (Canada), put it in, and it didn't clear up the problem!
So now I have these symptoms:
Smoking lightly during driving, black, heavier at acceleration which eases up with the turbo kicking in
Sluggish, won't downshift for pickup at speed
Rough at cruise speed (slightly less than 1900 rpm)
Fuel economy drop, from 10.8 km/100L to 12.1/100L
A P1186 code, which took me four passes to clear (gone at moment but without a doubt will be back)
Libby might sound a little clackier while at idle, but there is no problem starting. The jeep has dropped once into soft limp mode, unwilling to go over 3000 rpm when that 1186 CEL was on, but now will rev up. I can rev the crap out of her in park and no smoke.
Has anyone had a similar problem?
The state of the CRD is as follows:
Hasn't had its 100K service (have part of the parts list and will hopefully have time in August to tackle this, sitting at 135K)
Changed glows
Changed EGR
Only use synthetic 5/40
Transfer case went, replaced, trans shop thought it was blown shifter springs, was pristine inside, had them service it anyways since they yanked it, half labour costs.
Replaced MAP (was repeatedly throwing 0105. Solved problem)
Did Sam's Noob basics
I couldn't find a listing for the P1186. A rail sensor? Your input is appreciated.