Keith, I love your tunes, but that little bit of code you speak of is a hold-over from programmers that think they understand gas turbocharging...
We do not have that problem as there is not a throttle plate to slam closed when the throttle is released. Air is continuously and permanently flowing in one direction. When the fuel is cut, the boost just flows into the cylinders (as normal) and right out the exhaust. Since there is no combustion event, there is no expanding gas to drive the turbine, and the turbo spins down.
Boost has no reason to attempt flowing backwards, and no physical expression of this has ever presented itself to me on my elbow-kitted CRD.
If there are other reasons for keeping that programming - unrelated to the vehicle performance...
I'm OK with that. People are free to install the elbow kit or a blanking plate - and I suggest that for the ultimate guarantee of boost retention. The EGR is not a high quality device in this application, and I have seen evidence on many CRDs where it does not seal completely even when it *is* functional.