I can't help you with your brake problems but as far as the electrical problems:
Download the 2005 Jeep KJ Service Manuals here if you do not have them
http://www.colorado4wheel.com/manuals/Jeep/KJ/ Section 8W has the Wiring Diagrams, check the voltages are not fluctuating on the failing components as well as the ECM, TCM etc.
The 2005 CRD is the only CRD that has the FCM (Front Control Module) near the Firewall centrally located.
This passes all the Busses through to the different components.
The FCM has one connector on it and as it is exposed to the elements, mud, water, snow, salt etc. it can get corroded.
Try clean the FCM and it connector's contacts.
This FCM fails a lot and most 2005 CRD owners have had to try to locate replacement modules from Breaker yards but the supply is diminishing rapidly.
Try to get Error Codes pulled from the ECM!
