Yes, you can use stock Rubi axles and they would work well but you might want to regear if going to a tire over 32" since they only have 4.10's stock. I have seen Rubi axles w/ lower gears though for sale and that might be a good way to go too.
Basically your best/cheapest bet is to get a High pinion Dana 30 from an XJ and regear it and add a locker Or find one that is already geared and locked, the benefit of finding a modded one is you might also get upgraded steering w/ it too which would save money. The 8.25 rear can be built plenty stout to handle 33's so you might want to just stick w/ that, add gears, alloy axles and an ARB and call it a day. you could also get a D44 out of an Early XJ and do the same to it but there would be issues w/ then needing disc brakes, etc added to the rear.
as for Pirate, there are usually some good deals on there for axles but once again, you really need to decide what your end goal is, your max tire size, type of wheeling, etc. before knowing what to go shopping for.
Potentially a good deal:
http://www.pirate4x4.com/forum/showthread.php?t=635991
Not as good a deal but has potential:
http://www.pirate4x4.com/forum/showthread.php?t=635942
Basically, you are looking for a driver side drop front axle, meaning the pumpkin/diff/center section, etc. is on the driver side. This way it will line up w/ your transfer case forward output.
On the rear you just need a centered diff, center section which most diffs are. Bigger isn't always better and a D60 while beefy as hell is also larger in the center section and takes up more ground clearance than other axles.
as you can tell, there are a lot of variables to consider and manny different ways to do the job. It is up to you to decide what your end goal is then start shopping.