Hah, you'd be surprised how little of an effect that has on Maryland commuters - even the big ol' armored TJ gets cut off on the morning ride by cars that'd be little more than speed bumps.
Constant braking then sitting at a stop are the #1 enemy of brake rotors - running down a steep exit ramp with a red light at the end is the typical example of this. Basically you're heating up the pads and rotors, then trapping the heat in one location causing the warping. All of the above suggestions will help, as will letting off the the brakes when you do have to come to a stop during your commute. Do what you can to let the rotors keep from heating up in any one spot and you'll increase their longevity.
Beyond that, when you replace your rotors and pads look for a combination that maximizes cooling and operates at the coolest possible temperatures. It sounds backwards, but middle of the road semi-metallic brake pads can actually work better for this than high performance pads - they may not grip as hard, but they'll work at cooler temperatures instead of needing to heat up.