Quick summary:
Had a turbo charger failure. Drove it 1.5 miles after failure. Had to pull two hills to get to where I could park it. The high RPM's of those two pulls backed the flexplate bolts out, ruined the flexplate hub, the tming belt jumped four teeth and it crushed all lifters on the exhaust side of engine, . The engine started a few times during early diagnostics. We then went ahead and replaced flexplate, hub, bolts, torque converter (update-might as well), transmission seal, turbo charger, turbo oil return line (pinhole), and timing belt. We replaced all washers/rings for injectors, and replaced all of the rocker/lifter sets on the exhaust side.
Jeep starts. Jeep runs on it's own power, but doesn't run top. It's at my mechanics. Only code I know of is our old trusty friend, "EGR Low-flow".
There's enough oil getting into intercooler that the mechanic is saying, "wow, that's a lot."
No fuel leaks around injectors as we just dressed them up for the prom.
No lift pump. Fuel delivery / fuel system is fine.
Every system in this Jeep has been given every look and every test known to man.

This is month 6 of it being in the shop.
It's probably going to end up being something stupid at this point. I wouldn't be surprised if some lifters were knocked around.
I am awaiting the latest update from service manager.
Lots of waiting. Only one diesel guy at the shop, with multiple diesels going on at all times.
Thanks for the stimulation of questions.
msilbernagel wrote:
Some questions to help the helpers:
Did it run Ok before you tore it down?
How much oil is making it into the turbo outlet hose and intercooler? The 'normal' amount can be surprisingly significant..
Any CEL codes?
You may have vacuum leaks,
or perhaps air in the high-pressure lines to the injectors - any signs of fuel leaks around the injectors?
Could the timing belt be off a tooth?
Might you have knocked a few lifters off when re-installing the engine cover?
Any issues during the re-install that may give us a clue? You know, the ones in the back of your mind... ; ' )
Stock fuel system, or do you have a lift-pump?
Have you run the engine long, or taken a test drive yet?
Mark