kouik wrote:
Does anyone know which of the 6 maps for (BoostxRPM) represent pre-injection, post-injection and main injection? I tried to use some math to figure it out but they all seem to overlap each other at some point in term of which map is early or late in the injection process. Any help is appreciated.

I am not exactly sure which maps you are talking about, but since you mentioned there are 6, I assume you talking about the Start of injection maps?
first thing, there is no post injection. According to GDE and a post by MrMopar64(
http://www.lostjeeps.com/forum/phpBB3/viewtopic.php?p=306043#p306043)there are 2 pilot injections and a main injection. GDE has stated on here that they remove one of the pilot injection events and it occurs when a certain coolant temp is reached. MrMopar64 suggests the same in his post for the stock tune but does not say what causes it to stop. This is why I mentioned you start looking for a map which has temperature on one axis as it could indicate that the map is for the pilot injection.
I am having trouble understanding how the 6 SOI maps control both pilot and main injection as well. My understanding is that these maps are simply used for different engine temperatures. As the engine warms it will cause the fuel to burn at different rates and may require that the timing be backed off. If you look just before the SOI maps, there is an 8x10 map which uses temperature on the Y axis and it has a range which makes me think its for coolant temp. I believe this map may have something to do with the selection of the SOI map but cannot figure out how it works. the x axis is messed up.
Some things I noticed about the 6 maps: The first 3 have an x axis ranging from 0-90 IQ while the last 3 range from 0-80 IQ. The first 5 are generally the same, most ranging from about 0 in the top left to 19 in the bottom right. There does seem to be some slight differences between the first 3 vs 4 and 5. Map 6 is way more advanced thoughout most of the map. This is the only one I could see being the pilot injection map, but in the bottom right it is almost the same as the others.