One upside of having to pull the manifold back off was that I remembered to clean it up a bit this time....

It's far from perfect - the runners are still a bit gnarly, but at least the plenum is clean. I'm sure it's no surprise to anyone here, but what came out was nasty. Literally chunks of goop. I'm pretty tidy when it comes to cleaning car parts, but this effort left a trail of crap on my driveway. Whoops!
The parts pile is a bit less crazy in there than I thought, which is good. Nothing sucks worse than taking something and then forgetting where everything goes.
The only thing I can't immediately identify is a bracket that might be the turbo support bracket.
I need to get the camifold back on, and the EGR pipe reinstalled (no, I can't delete it). Then flex plate and bell housing adapter.
Other motor-related parts that I'm wondering about:
1. Viscous heater
2. Crank pulley
3. Serpentine belt idler pulleys
4. Intake elbow
Is there any reason this stuff should go on the motor before putting the motor in the car? Less stuff to get in the way during install is always nice.
Also, I have a replacement updated fuel head & new filter to go in... I assume there's no problem installing this after the motor is in, but is there any reason to do any of the work beforehand? I know there is a wiring change, but it looks pretty accessible.
That basically leaves a bunch of hoses & pipes, the alternator, and the starter which will go in when I get the thermostat.